This detailed overview may help your with your decision regarding which dyes to choose for your individual experiment.

--> Alexa Fluor 350 [Alexa350]
--> DY-415 [DY415]
--> ATTO 425 [ATTO425]
--> ATTO 465 [ATTO465]
--> Bodipy FL [BOFL]
--> Alexa Fluor 488 [Alexa488]
--> FAM [FAM]
--> Fluorescein isothiocyanate [FITC]
--> Fluoresceine [FLU]
--> Fluorescein-dT [FLUdT]
--> ATTO 488 [ATTO488]
--> Oregon Green 488 [OG488]
--> Oregon Green 514 [OG514]
--> Rhodamine Green [RGR]
--> TET [TET]
--> ATTO 520 [ATTO520]
--> JOE [JOE]
--> Yakima Yellow [YAKYE]
--> Bodipy 530/550 [BO530]
--> ATTO 532 [ATTO532]
--> HEX [HEX]
--> Alexa Fluor 555 [Alexa555]
--> Bodipy TMR-X [BOTMRX]
--> Cyanine3 [CY3]
--> ATTO 550 [ATTO550]
--> TAMRA [TAM]
--> Rhodamine Red [RRE]
--> ATTO 565 [ATTO565]
--> ATTO RHO12 [ATTORHO12]
--> ROX [ROX]
--> Texas Red [TxRed]
--> Cyanine3.5 [CY35]
--> LightCycler 610 [LC610]
--> ATTO 594 [ATTO594]
--> DY-480 XL [DY480]
--> DY-610 [DY610]
--> ATTO 610 [ATTO610]
--> LightCycler 640 [LC640]
--> Bodipy 630/650 [BO630]
--> ATTO 633 [ATTO633]
--> Alexa Fluor 647 [Alexa647]
--> Bodipy 650/665 [BO650]
--> ATTO 647N [ATTO647N]
--> Cyanine5 [CY5]
--> DY-649 [DY649]
--> Cyanine5.5 [CY55]
--> ATTO 680 [ATTO680]
--> DY-682 [DY682]
--> ATTO 700 [ATTO700]
--> ATTO 740 [ATTO740]
--> DY-782 [DY782]